Prime Medicine, Inc. · NASDAQ:PRME

Prime Medicine — Investor Presentation (May 2025)

36 slides from Prime Medicine's investor presentation, May 19, 2025

  1. Slide 1: Delivering on the promise of Prime Editing

    Exhibit 99.3 Delivering on the promise of Prime Editing Corporate Presentation May 2025 1

  2. Slide 2: Forward Looking Statements

    Forward Looking Statements This presentation contains forward-looking statements of Prime Medicine, Inc. ( Prime , we or our ) within the meaning of the Private Securities Litigation Reform Act of 1995, as amended. These forward-looking statements contain information about our current and future pro

  3. Slide 3: We are advancing Prime Editing to change the course of how diseases are treated

    We are advancing Prime Editing to change the course of how diseases are treated. We aim to provide safe, effective and curative treatments, which offer lifelong benefit to patients. 3

  4. Slide 4: Rapid Progress Since Inception: On the Cusp of Clinical Validation

    Rapid Progress Since Inception: Prime Medicine is on the Cusp of Clinical Validation and Sustainable, Long-Term Value Creation Sustained Growth and Clinical Validation and Platform Validation Commercial Success Platform Discovery Focused Execution Delivering the promise of Prime Editing Prime Editin

  5. Slide 5: Entering a New Era of Gene Editing: Generating Clinical Data for Multiple Programs

    Prime Medicine is Entering a New Era of Gene Editing: Generating Clinical Data for Multiple Programs, Leveraging Platform Modularity 2025 2026 2027+ PM577 for Wilson’s Disease: PM577 for Wilson’s Disease: PM577 for Wilson’s Disease: Prepare for 2026 clinical entry, advance File IND and/or CTA in 1H

  6. Slide 6: Prime Editing Can Edit, Correct, Insert and Delete DNA Sequences in Any Target Tissue

    We Believe Prime Editing is the Only Gene Editing Technology That Can Edit, Correct, Insert and Delete DNA Sequences in Any Target Tissue Deletion / Insertion Correction p47 Chronic Granulomatous Disease (CGD) Prime Editing is designed with a Point Mutation Correction wide range of genome editing Wi

  7. Slide 7: Prime Editing Has Highly Differentiated Safety Profile

    Prime Editing Has Highly Differentiated Safety Profile: No Off-Target Activity Detected in Any Lead Program No detectable off-target deletions, No detectable double No detectable No detectable chromosomal translocations or strand breakage off-target edits bystander edits rearrangements Examples from

  8. Slide 8: Initial Clinical Data Shows PM359 Safely and Effectively Corrects p47phox CGD Mutation

    Breakthrough Initial Clinical Data Shows PM359 Safely and phox Effectively Corrects Disease-Causing Mutation in p47 CGD Treatment with PM359 led to rapid engraftment and restoration of DHR positivity, well above minimum threshold for clinical benefit in single adult patient • Successful manufacturin

  9. Slide 9: Platform Modularity Accelerates and De-Risks Ongoing Efforts

    Prime Editing Platform Modularity Accelerates and De-Risks Ongoing Efforts, Enables Rapid Generation of New Product Candidates Off-Target Assays Prime Editors Manufacturing Clinical Delivery Nonclinical Regulatory 9

  10. Slide 10: Pipeline Focused on Value Creating Opportunities

    Pipeline Focused on Value Creating Opportunities Modular Lead IND- Phase Indication Delivery Discovery Platform optimization enabling 1/2 Wilson’s Disease LNP LIVER Alpha-1 Antitrypsin Deficiency LNP (AATD) 1 Cystic Fibrosis LUNG LNP/AAV (including PASSIGE ) 2 IMMUNOLOGY & Ex vivo CAR-T ex vivo ONCO

  11. Slide 11: Liver

    Liver | 11 11

  12. Slide 12: Prime Medicine's Liver Franchise: Wilson's Disease and AATD

    Prime Medicine’s Liver Franchise: Aspiring to Cure Two of the Largest Genetic Liver Diseases, Enabled by Platform Modularity Wilson’s Disease Alpha-1 Antitrypsin Deficiency Current IND-enabling activities ongoing Final stages of lead optimization Status Rapidly IND and/or CTA on track for H1’26 IND

  13. Slide 13: Proprietary LNP-formulated Prime Editor Multi-Component Drug Product

    Proprietary LNP–formulated Prime Editor is a Complex Multi-Component Drug Product Designed to Support Current and Future Liver Programs Ionizable LNP Modularity: • Nucleic acid encapsulation and endosomal escape Lipid 6 out of 8 components in the LNP are the same for liver programs* Helper • Stabili

  14. Slide 14: Modular LNP Dosed as Single Administration in Cynomolgus Monkey

    Prime Medicine’s Modular LNP Dosed as a Single Administration in Cynomolgus Monkey (NHP) With Minimal, If Any Safety Concerns • Well-tolerated: no acute reactions, clinical observations, or body weight changes • Transient LFT elevations • No change in platelets, coagulation or blood count • No chang

  15. Slide 15: Wilson's Disease

    Wilson’s Disease Confidential | 15 15

  16. Slide 16: Advancing Prime Editors for Wilson's Disease: Disease Overview

    Advancing Prime Editors for Wilson’s Disease: Disease Overview Large genetically defined disease well suited for Prime Editing Disease Severity and Opportunity Healthy Blood • Common liver and systemic disease presenting in teens to 20s • Leads to liver failure, neurocognitive decline and premature

  17. Slide 17: Prime Editor Efficiently Corrects H1069Q Mutation Resulting in Liver Copper Reduction

    Prime Editor Efficiently Corrects the H1069Q Mutation Resulting in Liver Copper Reduction In Vivo Editing efficiency and copper reduction in fully humanized homozygous p.H1069Q ATP7B mouse model Efficient correction of the H1069Q PM577 drove 75% reduction in copper transversion mutation accumulation

  18. Slide 18: Alpha-1 Antitrypsin Deficiency (AATD)

    Alpha-1 Antitrypsin Deficiency (AATD) Confidential | 18 18

  19. Slide 19: Advancing Prime Editors for AATD: Disease Overview

    Advancing Prime Editors for AATD: Disease Overview Disease Severity and Opportunity • AATD is an inherited genetic disorder that causes low levels of A1AT protein • Low levels of A1AT protein increases the risk of lung disease (emphysema) • Patients are also at risk of liver disease (cirrhosis) caus

  20. Slide 20: AATD Program Objective: Normalize A1AT Levels in PiZZ Patients

    AATD Program Objective: Normalize A1AT Levels in PiZZ Genotype Patients to Healthy Human Levels 50 40 ` Normal human range 30 20 11uM is minimum threshold for benefit 10 0 Genotype MM MS SS MZ SZ ZZ NULLNULL Healthy Low Target patient Human Risk population** • Correcting circulating AAT protein to »

  21. Slide 21: Prime Editor Efficiently Corrects Mutation Resulting in M-AAT Protein Restoration

    Prime Editor Efficiently Corrects the Mutation Resulting in M- AAT Protein Restoration In Vivo Efficient correction Restoration M-AAT Protein** AATD program in final stages of lead optimization; planning to file an IND and/or CTA in mid-2026 • Prime Editor restores AAT levels into healthy human rang

  22. Slide 22: Lung

    Lung | 22 22

  23. Slide 23: Advancing Prime Editors for Cystic Fibrosis

    Advancing Prime Editors for Cystic Fibrosis (CF), a Disease for Which There is No Curative Therapy Large genetically defined disease well suited for Prime Editing Disease Severity and Opportunity Healthy • Progressive, genetic disease that affects the lungs, pancreas and other organs, leading to pre

  24. Slide 24: Parallel Prime Editing Approaches to CF: Hotspot and PASSIGE

    Parallel Prime Editing Approaches to CF: Hotspot and PASSIGE In 2024, Prime Medicine entered into agreement with CF Foundation for up to $15 million to support development of Prime Editors for CF Hotspot PASSIGE Eight hotspot Prime Editors could address the “high unmet Potential to address nearly al

  25. Slide 25: Significant Progress Pursuing Five High Unmet Need Hotspot Mutations

    Prime Medicine has Made Significant Progress Pursuing Five “High Unmet Need” Hotspot Mutations Phenotypic Restoration of CFTR in In vitro Prime Editor in Primary HBEs differentiated ALI culture CFTR VCL G542X Prime HOM Edited Efforts towards in vivo delivery to humanized mice and large animals using

  26. Slide 26: Immunology and Oncology

    Immunology and Oncology | 26 26

  27. Slide 27: Strategic License and Collaboration Agreement with Bristol Myers Squibb

    Strategic License and Broad Collaboration Agreement with Bristol Myers Squibb (BMS) to Develop Prime Edited ex Vivo CAR-T Products First broad, multi-target collaboration advancing Prime Editing for the treatment of complex oncology and autoimmune indications • $110 million upfront • >$3.5 billion i

  28. Slide 28: PASSIGE and Multiplex Prime Editing is the Foundation of BMS Collaboration

    CAR-T: PASSIGE and Multiplex Prime Editing is the Foundation of Prime Medicine’s Collaboration with BMS Platform modularity has potential to accelerate development of additional CAR-T Programs Existing Limitations Prime Editing Solution ✓ >80% integration efficiency of CAR, aimed at TRAC ꭗ Low paylo

  29. Slide 29: Simultaneously and Efficiently Multiplex Edit CAR-T Cells

    Beyond Precisely Inserting a Chimeric Antigen Receptor, We Can Simultaneously and Efficiently Multiplex Edit CAR-T Cells Prime Editors can be multiplexed to introduce multiple genomic modifications in CAR-T cells High efficiency multiplex editing of B2M and TRAC Maintained efficiency with five multi

  30. Slide 30: Corporate

    Corporate Delivering on the promise of Prime Editing

  31. Slide 31: Business Development Will Continue to Play a Critical Role

    Beyond BMS, Business Development Will Continue to Play a Critical Role in Building Prime Medicine Prime Medicine remains active in sell-side business development, with the goal of accelerating our pipeline, bolstering our financial resources Partnering Strategy Current Relationships Within Our Core

  32. Slide 32: Extensive, Foundational Intellectual Property for Prime Editing Technologies

    Prime Medicine Holds Extensive, Foundational Intellectual Property for Prime Editing Technologies • Multiple configurations of RNA-templated gene editing - Prime Editor protein configurations: fusion, separate and split configurations - pegRNA configurations: fusion, split, separate and engineered c

  33. Slide 33: Leader in Gene Editing Positioned to Create Sustainable Value

    Prime Medicine is the Leader in Gene Editing Positioned to Create Sustainable Value Through Pipeline Execution and External Partnerships 4 Potential to address more than 90% of genetic diseases and opportunities in non -genetic diseases The Leader in Prime 4 Pre-clinical efficacy across variety of t

  34. Slide 34: Appendix

    Appendix Delivering on the promise of Prime Editing

  35. Slide 35: Prime Editing Designed with a Wide Range of Genome Editing Capabilities

    Prime Editing is Designed with a Wide Range of Genome Editing Capabilities Flexibility to select right approach for each indication based on editing need Small edits Mid-sized edits Large deletions Large insertions or Prime Editing (e.g., all 12 bp swaps, 1-bp to 20- (e.g., hotspot corrections, del

  36. Slide 36: PASSIGE Technology Enables Prime Editing to Insert Gene Sized Sequences

    PASSIGE Technology Enables Prime Editing to Insert Gene Sized Sequences Precisely, Potentially Addressing Large Markets PASSIGE: Prime-Assisted Site-Specific Integrase Gene Editing: One step non-viral multi-kilobase-size gene editing approach with no double-stranded breaks Where we are working today

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