Protagonist Therapeutics, Inc. · NASDAQ:PTGX

Protagonist Therapeutics — Investor Presentation (June 2021)

30 slides from Protagonist Therapeutics's investor presentation, Jun 14, 2021

  1. Slide 1: Company Overview

    PN - 943 PTG - 200 PN - 232 PN - 235 rusfertide (PTG - 300) PTG - 100 Dinesh V. Patel, PhD President & CEO June 2021 COMPANY OVERVIEW 1

  2. Slide 2: Forward-looking Statements

    Forward - looking Statements 2 This presentation and the accompanying oral presentation contain forward - looking statements made pursuant to the safe harbor pro visions of the Private Securities Litigation Reform Act of 1995. All statements other than statements of historical facts contained in thi

  3. Slide 3: Innovative Peptide Technology Platform

    Innovative Peptide Technology Platform 3 Multiple Assets from De Novo Discovery to Clinical Development Peptide Chemistry SAR, Leads Oral Stability Peptidomimetics GI Assays Phage Libraries Hits Computational Vectrix, Clusters Vectrix ® Clusters GI - Restricted Targeted GI absorption & delivery Syst

  4. Slide 4: Product Portfolio

    Product Portfolio 4 Multiple Development Candidates in Multiple Indications PROGRAMS CANDIDATE DISCOVERY PRE - CLINICAL PHASE 1 PHASE 2 KEY 2021 - 22 MILESTONES HEMATOLOGY & BLOOD DISORDERS Hepcidin Mimetics rusfertide (PTG - 300) s.c. 39 ‡ 3K  HQUROOPHQWFRPSOHWH  ྃ ‡ 8SGDWHG3K  GDWDRUDOS

  5. Slide 5: Polycythemia Vera: Disease, Diagnosis, Prevalence, Treatment Goal

    3RO\F\WKHPLD9HUD 5 Disease, Diagnosis, Prevalence, Treatment Goal Myeloproliferative neoplasm characterized by excessive production of red blood cells (RBCs) • Characterized by Janus Kinase 2 (JAK2) mutation Treatment goal is to control hematocrit level <45% • Elevated hematocrit is a hallmark of t

  6. Slide 6: Polycythemia Vera Current Treatment Options

    Polycythemia Vera 6 &XUUHQW7UHDWPHQW2SWLRQV 1. MPN Landmark Survey 2017, Trinity Primary Research 2019 • Treatment goal is to maintain HcT ≤ 45% • HcT control may be erratic with up and down excursions from 45% • Can lead to iron deficiency • Recommended when HcT cannot be controlled, or in high -

  7. Slide 7: Understanding PV Patient Journey

    Understanding PV Patient Journey 7 Evaluating the Unmet Need of PV Patients in US 1 Symphony Patient Journey Data Large, representative, and longitudinal source of healthcare claims data that captures over 290MM patients with over 78% of a ll prescription claims and 60% of all medical claims. Medica

  8. Slide 8: Real World PV Patient Treatment Data

    Real World PV Patient Treatment Data 8 Treatment patterns • Predominant treatment is phlebotomy, regardless of risk • Hydroxyurea is the most commonly used cytoreductive agent • Combination of hydroxyurea and phlebotomy commonly used to control HcT Hematocrit management to NCCN guidelines • Only 22%

  9. Slide 9: Elevated HcT Resulted in Greater Risk of Death

    (OHYDWHG +F7  5HVXOWHGLQ*UHDWHU5LVNRI'HDWK 9 Death from CV or Major Thrombotic Events Endpoint 0 6 12 18 24 30 36 42 48 0.85 0.90 0.95 1.00 Months P r o b a b i l i t y o f R e m a i n i n g E v e n t - f r e e Low HCT (<45%) High HCT (45%-50%) Patients with hematocrit between 45 - 50% were

  10. Slide 10: Rusfertide Market Opportunity for PV

    10 Rusfertide (PTG – 300) Market Opportunity for PV 7KHUHDUHDSSUR[LPDWHO\  SHRSOHLQWKH8QLWHG6WDWHV OLYLQJZLWK39  ‡ a  WUHDWHGSDWLHQWV ‡ *URZLQJPDUNHWZLWKa  QHZSDWLHQWVGLDJQRVHGDQQXDOO\ ‡ 0HGLDQVXUYLYDOLQ39DSSURDFKHVRUFDQH[FHHG  \HDUV 0DMRULW\RIGL

  11. Slide 11: Phase 2 Trial of Rusfertide in PV Patients

    PART 1 (28 wks) PART 2 (up to 12 wks) PART 3 (52 wks) Dose Finding * Efficacy Evaluation * Blinded Withdrawal Open Label Extension * Phase 2 Trial of Rusfertide in PV Patients 11 GOAL: Maintain Hematocrit <45% ELIGIBILITY REQUIREMENTS: • Phlebotomy dependent PV patients diagnosed as per 2016 WHO cri

  12. Slide 12: Therapeutic Phlebotomies Prior to and on Rusfertide

    Age/Sex Randomization - 20   - 12 - 8 - 4 0 4 8 12  20 24 28 32 36 48 - 24   52 56 60 64 68 72 76  40 44 84 Therapeutic Phlebotomies Prior to and on Rusfertide Weeks Subject  0.2 0.1 0.0 Pre - Dose Post - Dose Average Rate of phlebotomies 3  Screening Part 1 - Dose finding Part 2

  13. Slide 13: Baseline Characteristics

    Baseline Characteristics Characteristics Age (n=62) Range 27 - 76 years (Mean = 56.3 yrs ) Gender (n=62) Females 17 (27.4%) Males 45 (72.6%) Risk (n=62) Low 30 (48.4%) High 32 (51.6%) [Age based – 37.1%, Thrombotic event – 14.5%] Duration since PV Diagnosis ( n=60) <1 yr 11 (18.3%) 1 - <3 yrs 22 (36

  14. Slide 14: Rusfertide Controlled HCT for 1.5 Year while Reducing RBC Count

    14 Rusfertide Controlled HCT for 1.5 year while Reducing RBC Count in PV patients 57  45 39 33 N Bas 4 8  16 20 24 28 32 36 40  48 52 56 60 64 68 72  31 27 22 17 17 12 12  7 7 8 5 5 4 3  40 62 HCT (%) Weeks Bas 4 8  16 20 24 28 32 36 40  48 52 56 60 64 68 72  31 25 22 17 16 12 12 

  15. Slide 15: Rusfertide Normalized Iron Stores

    Rusfertide Normalized Iron Stores Screening Part 2/3 – Blinded withdrawal/OLE Part 1 – Dose finding Part 3 – Open label extension  Normalization observed in Ferritin levels Interim data as of May 11, 2021

  16. Slide 16: Improvement in MPN-TSS Scores Following Rusfertide

    2.3 1.8 0 0.5 1 1.5 2 2.5 Baseline Week 28 N=55 N=14 2.2 0.7 0 0.5 1 1.5 2 2.5 Baseline Week 28 N=55 1  3.3 2.4 0 1 2 3 4 Baseline Week 28 N=55 N=14 Improvement in MPN - TSS 1 Scores Observed Following Rusfertide Fatigue 3UREOHPVZLWK&RQFHQWUDWLRQ Itching Pruritis 16.9 16 12.8 10.8 0 5 10 15 20 B

  17. Slide 17: Rusfertide Safety Summary

    Grade 3 : Not related – Vomiting: 1; continuing drug – Intramural thrombus - lower left buttock 1; continuing drug • No Grade 4 Events • Injection site reaction (ISRs) were most common and associated with 28.1% of injections. All ISRs were transient, and no patient discontinued due to ISR • No drug

  18. Slide 18: Rusfertide Phase 3 Study Design in PV

    Rusfertide (PTG - 300) Phase 3 Study Design in PV 18 Based on End - of - Phase - 2 Meeting with FDA and Written Communication with EMA rusfertide Adult Patients with PV* N≈250 Enrollment Criteria: • High risk and low risk patients • Patients requiring frequent phlebotomy • With or without cytoreduct

  19. Slide 19: Rusfertide Market Preparation

    5XVIHUWLGH0DUNHW3UHSDUDWLRQ Intend to Demonstrate Clinical & Economic Value Before Approval Confidential – Managed Markets Working Group Meeting 19 Value Proposition Market Access HEOR Competitive Landscape 3RVLWLRQLQJ 6WUDWHJ\ Prescriber Education Distribution Channels • Patients • Prescribers

  20. Slide 20: Hereditary Hemochromatosis (HH) Disease Prevalence and Treatment

    Hereditary Hemochromatosis (HH) 20 Disease Prevalence and Treatment If untreated, iron overload can cause hepatomegaly, diabetes mellitus, skin hyperpigmentation, cardiomyopathy, diastolic dysfunction, heart failure, cirrhosis, etc . Iron overload disease Excessive iron accumulation in heart, liver,

  21. Slide 21: Rusfertide Rationale and Phase 2 Clinical PoC Study in HH

    Hereditary Hemochromatosis (HH) 21 Rusfertide (PTG - 300) Rationale and Phase 2 Clinical PoC Study Design • 16 patient open - label study • Efficacy measures » Reduction in serum Iron, TSAT, ferritin » Phlebotomy reduction » Liver iron content (LIC) by MRI » Quality of Life (QOL) effects: SF - 36, P

  22. Slide 22: IBD: Paradigm Shift Toward Targeted Oral and Combination Therapy

    IBD: Paradigm Shift Toward Targeted Oral and Combination Therapy 22 $*URZLQJ0XOWL  %LOOLRQ'ROODU0DUNHW • Injectable TNF mAbs – Blockbusters – Humira ® & Remicade ® • Significant room for improvement – Low response rates / loss of response – Safety concerns - black box warnings TNF mAbs dominate

  23. Slide 23: Oral IL-23R Specific Peptide Antagonists: Janssen Partnership

    Oral, IL - 23 Receptor Specific Peptide Antagonists: PTG - 200, PN - 235, PN - 232 23 Janssen Partnership IL - 23R ,/   5 ȕ  IL - 12R β 2 IL - 12R β 1 Stelara ® : Blocks both IL - 23 & IL - 12 pathways PTG - 200 : Designed to block IL - 23 receptor & IL - 23 pathway p19 antibody : Blocks IL - 23

  24. Slide 24: Oral, Gut-Restricted α4β7 Integrin Peptide Antagonist: PN-943

    Oral, Gut - Restricted, Investigational a 4 b 7 - Integrin Peptide Antagonist: PN - 943 24 Fully Owned Asset and Novel Approach against Validated Target Vs. %ULVNLQ0HWDO $P-3DWKRO      Clinically Validated, IBD Specific Target • T cell homing regulated by α4β7 integrin and MA

  25. Slide 25: PN-943 vs. PTG-100: Blood %RO Based Clinical Proof-of-Concept

    PN - 943 vs. PTG - 100: Blood %RO based Clinical Proof - of - Concept* Ph1 NHV Single Ascending Dose Study Ph2A Study UC PTG - 100 900 mg Histologic Remission 44% (7/16) Clinical Remission* 16% (3/19) EDVHGRQEOLQGHGHQGRVFRSLFUH  UHDGV Ph1 SAD 100 mg 300 mg 1000 mg 0 20 40 60 80 100 M a x i m u

  26. Slide 26: PN-943 Ph2 IDEAL Study in UC

    PN - 943 26 Ph2 IDEAL Study in UC Study Patients • Global enrollment at multiple sites • Subject to COVID - related delays 5 weeks 12 weeks 40 Weeks Week 52 Randomize (n=150) Placebo BID (n=50) Active Drug 450 mg BID (n=50) $FWLYH'UXJ  PJ%,' Q  PN - 943 Eligibility: Moderate – Severe UC; 3

  27. Slide 27: Protagonist Team

    Dinesh Patel, PhD | President & CEO David Liu, PhD | CSO, Head of Discovery & Pre - Clinical Dev 6DPXHO6DNV0'_ &OLQLFDO'HYHORSPHQW$GYLVRU Suneel Gupta, PhD | Chief Development Officer Donald Kalkofen | Chief Financial Officer Tracy Woody | EVP , Commercial Strategy Matthew Gosling | EVP, Gene

  28. Slide 28: Financials

    Financials 28 Cash and securities as of March 31, 2021 $279.7M $255M of capital raised during 2020 $20M available on debt facility; zero debt outstanding 43.9M shares of common stock outstanding

  29. Slide 29: Anticipated Timeline

    29 Anticipated Timeline Anticipated Key Event June 2021 • Updated data from rusfertide Ph2 PV trial 2021 • Rusfertide Ph2 PV trial update at medical conference • Preliminary rusfertide Ph2 result in HH • Third development program for rusfertide • Complete Ph1 trial of PN - 235 2022 • Initiate rusfer

  30. Slide 30: Thank You

    PN - 943 PTG - 200 PN - 232 PN - 235 rusfertide (PTG - 300) PTG - 100 THANK YOU 30

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