Cyclerion Therapeutics, Inc. · NASDAQ:CYCN

Cyclerion Therapeutics — Investor Presentation (September 2021)

59 slides from Cyclerion Therapeutics's investor presentation, Sep 30, 2021

  1. Slide 1: On a mission to develop treatments that restore cognitive function

    On a mission to develop treatments that restore cognitive function CORPORATE PRESENTATION

  2. Slide 2: Safe harbor statement

    Safe harbor statement This document contains forward-looking statements within the meaning of Section 27A of the Securities Act of 1933, as amended, and Section 21E of the Securities Exchange Act of 1934, as amended.Our forward-looking statements are based on current beliefs and expectations of our

  3. Slide 3: On a mission to develop treatments that restore cognitive function

    On a mission to develop treatments that restore cognitive function Tapping into a fundamental CNS signaling pathway with CY6463, a first-in-class, CNS-penetrant sGC stimulator Executing biomarker-guided development strategy in well-defined populations with cognitive impairment Tackling the enormous

  4. Slide 4: Contents

    Contents NO-sGC-cGMP is a fundamental CNS signaling pathway CY6463 translational pharmacology clinical study results Advancing next-generation sGC stimulator program Pipeline centered around improving cognitive function Potential for patient impact: 3 studies underway Executing on our priorities

  5. Slide 5: NO-sGC-cGMP is a fundamental CNS signaling pathway

    NO-sGC-cGMP is a fundamental CNS signaling pathway

  6. Slide 6: CY6463 amplifies the fundamental NO-sGC-cGMP signaling pathway

    CY6463 amplifies the fundamental NO-sGC-cGMP signaling pathway CY6463First-in-class BBB-permeable, positive allosteric modulator of sGCAmplifies endogenous NO-sGC-CGMP signaling to address central aspects of disease pathophysiology Preclinical data and extensive academic work validate the crucial ro

  7. Slide 7: CY6463 improves endpoints relevant to cognition

    CY6463 improves endpoints relevant to cognition Young Control Aged Control Aged CY6463 R6/2 + CY6463 46 nM R6/2 + CY6463 7 nM R6/2 WT Morphological plasticity In-vivo learning and memory Ex-vivo LTP Young rat/Vehicle Aged rat/Vehicle Aged rat/CY6463 Young rat/Vehicle Aged rat/Vehicle Aged rat/CY6463

  8. Slide 8: sGC stimulation amplifies a fundamental CNS signaling pathway

    CY6463 amplifies a fundamental CNS signaling pathway NO-sGC-cGMP pathway plays a critical role in brain functionsGC stimulation with CY6463 amplifies NO-sGC-cGMP signalingMorphological, ex vivo and in vivo data demonstrate important role of sGC in synaptic plasticity, learning and memory, and 6463’s

  9. Slide 9: Translational Pharmacology Study Results

    CY6463 Translational Pharmacology Study Results

  10. Slide 10: CY6463 showed rapid and persistent improvements in multiple biomarkers

    CY6463 showed rapid and persistent improvements in multiple independent biomarkers associated with cognitive impairment In a 15-day study in 24 healthy elderly subjects CY6463 demonstrated: Increased alpha and gamma power Improved N200 latency Faster saccadic eye movement (SEM) reaction time Reduced

  11. Slide 11: Phase 1b translational pharmacology study designed to evaluate CNS activity

    Phase 1b translational pharmacology study designed to evaluate CNS activity *due to COVID restrictions, 12 subjects completed only period 1 Healthy elderly population (≥65 years) Objectives washout CY6463 QD CY6463 QD Placebo Placebo 15 days 15 days 24 subjects completed period 1 12 subjects complet

  12. Slide 12: CY6463 showed rapid improvement in biomarkers of cognition

    CY6463 showed rapid improvement in biomarkers of cognition Increased alpha and gamma power Faster saccadic eye movement reaction time Improved N200 latency Alpha power: CY6463 vs. placebo Day 15 Improvement Age (years) Untreated CY6463 treated Time (ms) Time (sec) p=0.0216 Placebo CY6463 p=0.0216 Im

  13. Slide 13: Pipeline centered around improving cognitive function

    Pipeline centered around improving cognitive Function

  14. Slide 14: CY6463 data point to potential in cognition

    CY6463 data point to potential in cognition Preclinical CNS pharmacology Potential to improve cognitive function Neuronal function Neuro-inflammation Bioenergetics Vascular function Increased posterior alpha and gamma power Improved N200 latency Faster saccadic eye movement (SEM) andreaction time Re

  15. Slide 15: Cognitive impairment is a debilitating facet of many CNS diseases

    Cognitive impairment is a debilitating facet of many CNS diseases Neurodegenerative Alzheimer’s Disease Parkinson’s Dementia Lewy Body Dementia Neuropsychiatric Major Depressive Disorder Bipolar Disorder Autism Cancer/chemotherapy-induced cognitive impairment Traumatic brain injury Stroke Event-rela

  16. Slide 16: Biomarker-guided development strategy in well-defined populations

    Biomarker-guided development strategy in well-defined populations with cognitive impairment ADv | Alzheimer’s Disease with vascular pathology (ADv) CIAS | Cognitive Impairment Associated with SchizophreniaMELAS | Mitochondrial Encephalomyopathy, Lactic Acidosis, and Stroke-like episodes MELAS ADv Ne

  17. Slide 17: Potential for patient impact: our priority indications

    Potential for patient impact: our priority indications

  18. Slide 18: Pipeline: CY6463 and CY3018 programs

    DISCOVERY IND-ENABLING PHASE 1* PHASE 1b/2a PHASE 2 CY6463 MELAS ADv CIAS Multiple under assessment CY3018 Multiple under assessment Advancing parallel, signal-seeking, exploratory studies in priority patient populations *Two phase 1 studies were completed in healthy young and old (>65 years of age)

  19. Slide 19: ADv: growing patient population, limited treatments

    Growing patient population, devastating impact, limited treatments Biomarker-guided development strategy: ADv Exploratory Phase 2Near-term impact on disease-specific biomarkers and cognition Larger, longer studies symptomatic trialsfocused on cognition Initial approval expected on surrogate, symptom

  20. Slide 20: ADv study ongoing

    ADv study ongoing 20 Exploratory, signal-seeking study to evaluate safety, tolerability, and pharmacodynamic effects (EEG, MRI, neuroinflammatory biomarkers, cognition) Once-daily CY6463 vs. placebo12 weeks30 participants Confirmed AD pathology (PET, CSF)2+ cardiovascular risk factorsMild-moderate s

  21. Slide 21: Biomarker-guided development strategy: MELAS

    Biomarker-guided development strategy: MELAS Exploratory Phase 2Near-term impact ondisease-specific biomarkers Larger, longer symptomatic trials focused on cognition and stroke-like-episodes Potential for accelerated approvalwith predictive biomarker Transformative therapy for patients with MELAS Po

  22. Slide 22: MELAS study ongoing; data expected 1H 2022

    MELAS study ongoing; data expected 1H 2022 22 Objectives Exploratory, signal-seeking study to evaluate safety, tolerability, and pharmacodynamic effects (MRI, biomarkers) Study design 29-day open label Once-daily CY6463Up to 20 adults (targeting 12 completers) Patient targeting Genetically confirmed

  23. Slide 23: Biomarker-guided development strategy: CIAS

    Biomarker-guided development strategy: CIAS Exploratory Phase 1bSafety + near-term impact on disease-relevant biomarkers Larger, longer studies focused on biomarker-identified populations Standard of care adjunctive therapy Improve cognitive impairment and functional outcomes Today Tomorrow Future C

  24. Slide 24: CIAS study ongoing

    CIAS study ongoing 24 Objectives Exploratory, signal-seeking study to evaluate safety, tolerability, and pharmacodynamic effects (qEEG, ERP, digital cognitive performance battery) Study design 14-day in clinic, randomized, placebo-controlled, double-blinded Once-daily CY6463Approximately 60 particip

  25. Slide 25: Next generation sGC stimulator program

    Next generation sGC stimulator program

  26. Slide 26: CY3018: selectively targeting the CNS

    Next generation sGC stimulator CY3018: selectively targeting the CNS Greater relative CNS exposure Greater relative CNS pharmacology Greater CSF:plasma ratio for CY3018 translating into greater relative CNS pharmacologyCY3018 is progressing though IND-enabling developmentOngoing pharmacology studies

  27. Slide 27: Executing on our priorities

    WZ ’ = cyclerion TN EXECUTING ON OUR PRIORITIES

  28. Slide 28: 2021: executing on our priorities

    2021: executing on our priorities 28 * Preliminary, unaudited unrestricted cash, cash equivalents and restricted cash balance as of March 31, 2021 Clinical andpre-clinical ADv Ph2 study ongoingMELAS Ph2 study data expected H1 2022CIAS Ph1b study ongoingAdvancing CY3018, next-generation development c

  29. Slide 29: On a mission to develop treatments that restore cognitive function

    On a mission to develop treatments that restore cognitive function Tapping into a fundamental CNS signaling pathway with CY6463, a first-in-class, CNS-penetrant sGC stimulator Executing biomarker-guided development strategy in well-defined populations with cognitive impairment Tackling the enormous

  30. Slide 30: Appendices

    Appendices Preclinical, Phase 1 and translational pharmacology studies, references

  31. Slide 31: Preclinical data

    WZ ’ = cyclerion TN PRECLINICAL DATA

  32. Slide 32: CY6463 demonstrated beneficial effects in preclinical studies

    CY6463 demonstrated beneficial effects in preclinical studies across multiple domains associated with cognitive disease 32 Cerebral Blood FlowIncreased blood flow in areas associated with memory and arousal by fMRI BOLD imaging IMPROVED CellularBioenergeticsIncreased ATP and restored gene expression

  33. Slide 33: CY6463 improved neuronal function

    CY6463 improved neuronal function Restored hippocampal long-term potentiation to wild-type levels in a mouse neurodegenerative model Wild type Disease Disease + CY6463 (46 nM) * Normalized fEPSPAmplitude Time (min) 10 30 50 70 1.0 5 2.0 2.5 ImproveNeuronal Function ReduceNeuroinflammation EnhanceCel

  34. Slide 34: CY6463 increased qEEG gamma power

    CY6463 increased qEEG gamma power No effect seen with PDE9 inhibitor Healthy awake rats were treated with clinically relevant doses of CY6463 (3 mg/kg) or PDE9 inhibitor (10 mg/kg) Graph displays 1-2h post-dose, mean ± SEM ImproveNeuronal Function ReduceNeuroinflammation EnhanceCellular Bioenergetic

  35. Slide 35: CY6463 and donepezil act independently to enhance qEEG signal

    CY6463 and donepezil act independently to enhance qEEG signal Combination elicited additive increase in gamma band power in healthy rats ImproveNeuronal Function ReduceNeuroinflammation EnhanceCellular Bioenergetics ImproveCerebral Blood Flow *p<0.05 vs Veh# p<0.05 CY6463 vs CY6463 +DonepezilHealthy

  36. Slide 36: CY6463 improved learning and memory in aged rats

    CY6463 improved learning and memory in aged rats Increased rate of learning in aged rats treated with CY6463 in Morris Water Maze Healthy aged male rats were administered CY6463 (10 mg/kg, p.o.) daily during Morris Water Maze training Young rat/Vehicle Aged rat/Vehicle Aged rat/CY6463 Young rat/Vehi

  37. Slide 37: CY6463 improved cognitive function in pharmacologically impaired rats

    CY6463 improved cognitive function in pharmacologically impaired rats ImproveNeuronal Function ReduceNeuroinflammation EnhanceCellular Bioenergetics ImproveCerebral Blood Flow Rat Novel Object Recognition *p<0.05 vs. VEH + MK-801 rats CY6463 acts downstream of NMDA receptor to reverse deficit induce

  38. Slide 38: CY6463 improved neuronal function: spine density

    Mushroom spine density Restoration of spine density has potential to provide neuroprotectiveeffects and improve synaptic function in neurodegenerative diseases CY6463 improved neuronal function Enhanced hippocampal spine density in aged animals treated with CY6463 Young Control Aged Control Aged CY6

  39. Slide 39: CY6463 reduced neuroinflammation

    CY6463 reduced neuroinflammation Inhibited in vitro LPS-induction of biomarkers of neuroinflammation 39 *p<0.05 vs. control LPS-treated wellsCY6463 (10 µM) and DETA (30 µM) were incubated with SIM-A9 cells or rat brain 3D microtissues for 30 minutes before LPS (100 ng/ml) incubation and further incu

  40. Slide 40: CY6463 enhanced cellular bioenergetics

    CY6463 enhanced cellular bioenergetics Increased ATP and restored decreased gene expression in cells from patients with mitochondrial diseases 40 *p<0.05 vs. vehicle-treated wellsGM13740 Leigh Syndrome patient cells obtained from the Coriell Institute were treated for 24h before ATP quantificationTF

  41. Slide 41: CY6463 improved cerebral blood flow

    CY6463 improved cerebral blood flow 41 Increased blood flow in areas associated with memory and arousal by fMRI BOLD imaging Peripherally restricted sGC stimulator CNS-penetrant sGC stimulator CY6463 Reticular activating system Thalamus Cortical transition areas Ventral hippocampus ImproveNeuronal F

  42. Slide 42: Phase 1 study results

    WZ ’ = cyclerion TN PHASE 1 STUDY RESULTS

  43. Slide 43: CY6463 Phase 1 showed CNS exposure, target engagement, PK, and safety

    Results CY6463 phase 1 showed CNS exposure, target engagement, PK, and safety PHASE 1 (completed) 110 healthy young Age range 18-63 Standard safety Identified safe and well-tolerated dose levels with steady-state CNS exposure in therapeutic target range* Linear, predictable PK, consistentwith QD dos

  44. Slide 44: Translational Pharmacology Study Results

    Translational Pharmacology Study Results

  45. Slide 45: CY6463 showed rapid and persistent improvements in multiple biomarkers

    CY6463 showed rapid and persistent improvements in multiple independent biomarkers associated with cognitive impairment In a 15-day study in 24 healthy elderly subjects CY6463 demonstrated: Increased alpha and gamma power Improved N200 latency Faster saccadic eye movement (SEM) reaction time Reducti

  46. Slide 46: Biomarker overview: qEEG frequency bands and clinical implications

    Biomarker overview: qEEG frequency bands and their clinical implications qEEG is quantitative electroencephalography, an objective method that measures electrical activity and brain wave patterns Resting-state qEEG: subjects sit facing a featureless wall without movingrecorded with eyes open and clo

  47. Slide 47: CY6463 improved qEEG measures: significant increase in alpha power

    CY6463 improved qEEG measures: significant increase in alpha power qEEG is quantitative electroencephalography, an objective method that measures electrical activity and brain wave patterns CY6463 vs. baseline Significant increase in EEG alpha power No effect of placebo Placebo vs. baseline CY6463 v

  48. Slide 48: CY6463's consistent alpha power effects across repeat sessions

    CY6463’s consistent alpha power effects across repeat sessions indicate stable and robust signal Footer DAY 1baseline DAY 15change from baseline CY6463 relative to placebo CY6463 Placebo Pre-dose 1 Pre-dose 2 Pre-doselast dose 2 hr post-dose 3 hr post-dose 6 hr post-dose Magnitude of improvement equ

  49. Slide 49: CY6463 increased alpha power with high responder rate

    CY6463 increased alpha power with high responder rate (>70%) 1. Includes all subjects. For CY6463 and pbo each: n=12 for period 1, n=6 for period 2 Increase in alpha powerDay 15 change from baseline in mean closed-eye alpha (8-12 Hz) Power Consistent individual treatment responsesPosterior Closed-Ey

  50. Slide 50: CY6463 treatment associated with trend improvement in gamma power

    CY6463 treatment associated with trend improvement in gamma power Change in Closed-Eye Gamma (25-45 Hz) Power Placebo CY6463 Placebo CY6463 200 150 100 50 0 -50 -100 Anterior (p = 0.081) Posterior (p = 0.1163) Change from baseline (%)

  51. Slide 51: Biomarker overview: event-related potential (ERP)

    Biomarker overview: event-related potential (ERP) Trial: 500 tones80% standard, 20% deviant Deviant Standard ERP oddball paradigmSubjects wear EEG cap and headphones, hear tones with instruction to press a button upon deviant tones P300 N200 N200Stable component of ERP waveformStimulus identificatio

  52. Slide 52: CY6463 improved N200 latency and effect increased with age

    CY6463 improved N200 latency and effect increased with age Day 15 Improvement Age (years) Untreated CY6463 treated Time (ms) Effect of age on N200 latency Overall decrease in N200 latency for CY6463 treated vs untreated on day 15 (p<0.02) Effect more pronouncedin older subjects

  53. Slide 53: CY6463 improved N200 latency, driven by response in older subjects

    65 to 69yn=10 ≥70 yn=14 p=0.016 CY6463 improved N200 latency, driven byresponse in older subjects Greater decrease in ≥70y vs <70yDay 15 change from baseline Latency response was greater in subjects ≥70y vs 65-69y (p=0.016) Narrowing of variance in ≥ 70y supports a drug effect In ≥ 70y, magnitude of

  54. Slide 54: Biomarker overview: saccadic eye movement

    Biomarker overview: saccadic eye movement as an objective measure of attention and cognition Short, fast, simultaneous tracking of both eyes in the same direction Brain areas involved include the frontal cortex, superior colliculus, substantia nigra, and amygdala Considered to be reflective of atten

  55. Slide 55: CY6463 improved saccadic eye movement

    CY6463 improved saccadic eye movement, an objective functional measure Decrease in saccadic reaction time Increase in saccadic peak velocity Shorter saccadic reaction times and faster saccadic velocities indicate that CY6463 is improving CNS functional performance – motor output – in addition to CNS

  56. Slide 56: CY6463 improved neuroinflammatory biomarkers

    CY6463 improved neuroinflammatory biomarkers A2M and C3 are associated with pathological aging and Alzheimer’s Disease Alpha-2-macroglobulin (A2M) levels predict cognitive decline and development of AD; may lead to tau hyperphosphorylation Complement C3 (C3) colocalizes with Aβ plaques and tau tangl

  57. Slide 57: Relevant reference publications

    Relevant reference publications

  58. Slide 58: Relevant reference publications (1 of 2)

    Relevant reference publications (1 of 2) NO-sGC-cGMP signaling in the CNSCorreia S, et al. “The CNS-penetrant soluble guanylate cyclase stimulators CY6463 reveals its therapeutic potential in neurodegenerative diseases.” Frontiers in Pharmacology. 2021;12(1014)Correia S, et al. “The CNS-penetrant so

  59. Slide 59: Relevant reference publications (2 of 2)

    Relevant reference publications (2 of 2) Event-related potential (ERP): MMN, N200 and P300Bennys K, Portet F, Touchon J. Diagnostic value of event-related evoked potentials N200 and P300 subcomponents in early diagnosis of Alzheimer’s disease and mild cognitive impairment. J Clin Neurophysiol 2007;2

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